dgl.topk_nodes

dgl.topk_nodes(graph, feat, k, descending=True, idx=None)[source]

Return graph-wise top-k node features of field feat in graph ranked by keys at given index idx. If :attr: descending is set to False, return the k smallest elements instead.

If idx is set to None, the function would return top-k value of all indices, which is equivalent to calling torch.topk(graph.ndata[feat], dim=0) for each example of the input graph.

Parameters:
  • graph (DGLGraph) – The graph.
  • feat (str) – The feature field.
  • k (int) – The k in “top-k”
  • descending (bool) – Controls whether to return the largest or smallest elements.
  • idx (int or None, defaults to None) – The index of keys we rank feat on, if set to None, we sort the whole feat.
Returns:

The first tensor returns top-k node features of each single graph of the input graph: a tensor with shape \((B, K, D)\) would be returned, where \(B\) is the batch size of the input graph. The second tensor returns the top-k node indices of each single graph of the input graph: a tensor with shape \((B, K)`(:math:`(B, K, D)\) if` idx is set to None) would be returned, where \(B\) is the batch size of the input graph.
Return type:

tuple of tensors

Examples

>>> import dgl
>>> import torch as th

Create two DGLGraph objects and initialize their node features.

>>> g1 = dgl.DGLGraph()                           # Graph 1
>>> g1.add_nodes(4)
>>> g1.ndata['h'] = th.rand(4, 5)
>>> g1.ndata['h']
tensor([[0.0297, 0.8307, 0.9140, 0.6702, 0.3346],
        [0.5901, 0.3030, 0.9280, 0.6893, 0.7997],
        [0.0880, 0.6515, 0.4451, 0.7507, 0.5297],
        [0.5171, 0.6379, 0.2695, 0.8954, 0.5197]])

>>> g2 = dgl.DGLGraph()                           # Graph 2
>>> g2.add_nodes(5)
>>> g2.ndata['h'] = th.rand(5, 5)
>>> g2.ndata['h']
tensor([[0.3168, 0.3174, 0.5303, 0.0804, 0.3808],
        [0.1323, 0.2766, 0.4318, 0.6114, 0.1458],
        [0.1752, 0.9105, 0.5692, 0.8489, 0.0539],
        [0.1931, 0.4954, 0.3455, 0.3934, 0.0857],
        [0.5065, 0.5182, 0.5418, 0.1520, 0.3872]])

Top-k over node attribute h in a batched graph.

>>> bg = dgl.batch([g1, g2], node_attrs='h')
>>> dgl.topk_nodes(bg, 'h', 3)
(tensor([[[0.5901, 0.8307, 0.9280, 0.8954, 0.7997],
         [0.5171, 0.6515, 0.9140, 0.7507, 0.5297],
         [0.0880, 0.6379, 0.4451, 0.6893, 0.5197]],
[[0.5065, 0.9105, 0.5692, 0.8489, 0.3872],
[0.3168, 0.5182, 0.5418, 0.6114, 0.3808], [0.1931, 0.4954, 0.5303, 0.3934, 0.1458]]]), tensor([[[1, 0, 1, 3, 1], [3, 2, 0, 2, 2], [2, 3, 2, 1, 3]],
[[4, 2, 2, 2, 4],
[0, 4, 4, 1, 0], [3, 3, 0, 3, 1]]]))

Top-k over node attribute h along index -1 in a batched graph. (used in SortPooling)

>>> dgl.topk_nodes(bg, 'h', 3, idx=-1)
(tensor([[[0.5901, 0.3030, 0.9280, 0.6893, 0.7997],
         [0.0880, 0.6515, 0.4451, 0.7507, 0.5297],
         [0.5171, 0.6379, 0.2695, 0.8954, 0.5197]],
[[0.5065, 0.5182, 0.5418, 0.1520, 0.3872],
[0.3168, 0.3174, 0.5303, 0.0804, 0.3808], [0.1323, 0.2766, 0.4318, 0.6114, 0.1458]]]), tensor([[1, 2, 3],

[4, 0, 1]]))

Top-k over node attribute h in a single graph.

>>> dgl.topk_nodes(g1, 'h', 3)
(tensor([[[0.5901, 0.8307, 0.9280, 0.8954, 0.7997],
         [0.5171, 0.6515, 0.9140, 0.7507, 0.5297],
         [0.0880, 0.6379, 0.4451, 0.6893, 0.5197]]]), tensor([[[1, 0, 1, 3, 1],
         [3, 2, 0, 2, 2],
         [2, 3, 2, 1, 3]]]))

Notes

If an example has \(n\) nodes and \(n<k\), in the first returned tensor the \(n+1\) to \(k`th rows would be padded with all zero; in the second returned tensor, the behavior of :math:`n+1\) to :math:`k`th elements is not defined.